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Quarter: Q3

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Goals

Vocab/Coding systems


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nameHL7_V2.5.1_LRI_DTSU3_2018JUNE_CH14_CLINICAL_GENOMICS_CODE_SYSTEMS.pdf
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Ballot Comment

IDSummaryStatusBallot ResolutionResolutionSubmitter
16876Use of publically available external coding systems and autocomplete lookup tables - 2018-May Genomics #58Waiting for Input

persuasive with mod

Motion to create an appendix for Genomics Reporting IG that will contain the information contained in the HL7_V2.5.1_LRI_DTSU3_2018JUNE_CH14_CLINICAL_GENOMICS_CODE_SYSTEMS.pdf doc. Also add glstring.org code system (from Bob Milius/Joel Schneider). HTML version of this doc will be created, with recommended code system uri for each, and added guidance on it's use.

1st/2nd = Kevin/Clem

abstain/nay/yea = 0/0/11

A proposed new section on the V2 page: All of the publicly available external coding systems mentioned in this IG (and the V2 LRI chapter 14.1) are available for exploration with autocomplete lookups from the Lister Hill Clinical Table search browser that is updated monthly: https://clinicaltables.nlm.nih.gov/Clement McDonald


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Quarter: Q4

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Goals

Wrap Up / Planning

  • Next WGM rooms
    • same days/time
  • Weekly calls - no changed to schedule - same day/time
    • freeconferencecall.com works for everyone in room, Clem will use it but prefers zoom.
  • Google Docs/announcements
    • add short readable tinyurl for all meeting docs that is reused every week
  • Deadlines
    • NIB - Sun, Oct 28 - for re-balloting IG
    • PSS - Sun, Oct 14 (not needed, we can reuse our current PSS)
    • R4 - affects Sequence resources, and other genomics profiles
      • Oct 12: All normative comments reconciled in gForge with votes and no “tracker issues” (doesnt' affect us)
      • Oct 31: All R4 STU comments reconciled in gForge with votes and no “ tracker issues”
      • Nov 1: Substantive change freeze for R4
      • Nov 11: Final content freeze, start of QA
      • Nov 25: QA finishes, start apply QA
      • Dec 2: Specification locked – no commits without permission
    • January IG ballot
      • We will allow FHIR IG content to go to ballot in January
      • If you’re balloting profiles or value sets or other artifacts, you’re balloting a FHIR IG
      • Be sure you have a good reason to go to ballot. Going to ballot with “for comment” just because there happens to be a ballot cycle is not permitted
      • Timelines, QA and tooling expectations will be strictly enforced
        • If you don’t meet the timelines, you will not go to ballot this cycle
    • FHIR IG Deadlines 
      • Oct. 17: IG proposals due (not needed for us)
      • Oct 28: NIBs due
        • IG must be “feature complete” and building in HL7’s continuous integration environment.  If not, the NIB will be refused
      • Nov 18: Content deadline – only QA changes after this point
      • Dec. 2: Final freeze deadline

ID

Summary

Status

Ballot Resolution

Resolution

Submitter

16553

Consider adding Sequence resource as part of the patient compartment

Triaged

persuasive - since sequence will not be significantly changed by R4, this should be part of Patient compartment

1st/2nd - Joseph/Patrick

abstain/nay/yea

0/0/8

(to be added to tracker updated)



Michael Calderero

13918

Create sequence-reads profile on sequence

Triaged

We had a discussion, but no motion. Seems to be related to sequence quality, but no one had an example of it's use. A link/pointer to raw reads seems useful (e.g. a pointer to something in NCBI/NIH Sequence Read Archive), and this can be done using sequence.repository, but sending the actual reads in a FHIR resource seems out of scope. We will need further explanation of what is requested.

(tracker updated)


Xin Liu

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